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Menu
  • Who We Are
    • About
    • Leadership & Administration
    • Boards and Committees
    • Membership
    • Support SD CFAR
  • Core Services
    • Administrative Core
    • Advanced Technology Core
      • Single-Cell -Omics Unit
      • Flow Cytometry Unit
      • Omics/Epigenetics Unit
    • Biostatistics and Modeling Core
    • Clinical Investigation Core
    • Developmental Core
    • Sociobehavioral Science Core
  • Grants
    • Developmental Grants
      • Developmental Grant Review Committee
    • Developmental x Clinical Investigation Grants
    • Developmental x HWSPH Grants
    • Clinical Investigation Kick Start (CI-KS) Grant
    • Clinical Research Kick Start (CI-KS) Grant
    • Next Generation Grant
    • Propel Grant
    • Post-Award Responsibilities
  • Education and Events
    • HIV Education & Training
    • Research Day
    • Research Unplugged
  • Working Groups
    • Inter-CFAR Collaboration on HIV Research in Women Working Group
  • Resources
    • Cite the SD CFAR
      • CFAR Logo
      • NIH Public Access Requirements
    • Collaborative Marketplace
    • Grant Writing
      • The Archive of Investigator Development (AID) Repository
      • Training Videos
      • O-K Review
    • Leadership Academy
    • Manuscript Resources
    • SD CFAR Navigator
    • Newsletter

Advanced Technology Core

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  3. Advanced Technology Core

About

The Advanced Technology (AT) Core at SD CFAR aims to accelerate scientific discovery by providing centralized access to cutting-edge instrumentation, expertise, and data analysis, with a strong emphasis on supporting HIV, immunology, and precision medicine research. By consolidating resources at UCSD and deepening partnerships with the La Jolla Institute (LJI) and Scripps Research (Scripps), the AT Core will offer an extensive array of advanced services, ensuring researchers have the necessary tools and support for high-impact studies.

The AT Core’s mission is to expand access to sophisticated cytometric, genomic, imaging, and epigenetic technologies while providing critical bioinformatics and quality assurance support. It functions as the methodological and translational engine of the SD CFAR. By integrating advanced technologies, rigorous quality systems, cross-institutional validation, and structured investigator support, the AT Core accelerates discovery while ensuring reproducibility, scalability, and meaningful impact toward HIV cure and improved health outcomes.

Sub Units

Cellular Biology Unit Data Unit Flow Cytometry Unit Omics/Epigenetics Unit Single-Cell -Omics Unit Virology Unit

Location and Contact


Location to be updated: The San Diego CFAR Advanced Technology Core is located on the UC San Diego School of Medicine campus in the Stein Clinical Research Building, 4th Floor, Room 410.

The Advanced Technology Core is housed in separate clinical and basic science laboratories, each outfitted with all the necessary equipment.The clinical laboratory is in Hillcrest near the AntiViral Research Center (AVRC) where clinical trials are conducted. Just 12 miles north, the basic science laboratory is located in the Stein Clinical Research Building (SCRB) on the UCSD main campus in La Jolla. The AVRC site is responsible for point-of-care assays (e.g., rapid HIV antibody testing, urine dipsticks) and clinically validated assays (e.g., viral loads), performed through CLIA-certified laboratories when needed for clinical endpoints. The SCRB site supports the basic science assays (e.g., viral quantification by ddPCR and proviral sequencing). A courier makes 1-2 trips between the AVRC and the SCRB labs daily, Monday-Friday.

Contact information
9500 Gilman Drive, Mail Code 0825
La Jolla, California 92093
TEL: 858-642-1620
E-mail: Core Administrator

Additionally, some services are performed at:
220 Dickinson St, Suite A
San Diego, CA 92103

Protocol and Resources


Please click the links below to review our protocols and user resources.

  • Rapid HIV testing
  • HIV concentration, extraction, and quantification
  • HIV PCR and population-based clonal and single-genome sequencing
  • Specimen cryostorage
  • Specimen data management
  • Shipping and tracking
  • Quality assurance
  • Confidentiality and security
  • Data accuracy
  • Data accountability
  • Training and education

  • Checklist for working with HIV in BL3 lab
  • Certification for use of Pre-PCR Room
  • Measurement Enhanced Pooling Assay Calculator (MEPAC)

The UC San Diego Primary Infection Resource Consortium (PIRC) is the largest, most intensively studied and well-characterized longitudinal cohort of acute and early HIV infected (AEH) individuals in the United States. We collect critically important clinical and biological samples, which are then archived for use by national and international investigators studying a range of high-priority research questions. With its unique repository of clinical specimens and behavioral data, PIRC is dedicated to helping qualified laboratories and clinicians all over the world expand the scope of life-changing, critical HIV research.

  • CFAR PCR BOOTCAMP – ENGLISH
  • CFAR PCR BOOTCAMP – PORTUGUESE
  • CFAR PCR BOOTCAMP – SPANISH

Acknowledging Publications


If work performed for you at the San Diego CFAR Advanced Technology Core results in publication, please acknowledge us with the following statement and please e-mail a PDF of your publication to the Core Administrator:

This work was performed with the support of the Advanced Technology Core at the San Diego Center for AIDS Research (P30 AI036214).


FOR INTERNAL USE:

Faculty and Staff of the Advanced Technology Core please use the following acknowledgement statement for our publications:

  • AI036214 (CFAR P30)
  • UL1TR001442 (ACTRI)
  • The James B. Pendleton Charitable Trust

  • AI007384 (HOPE T32 Training)

  • DK131532 (R01 Smith Gut)
  • AI169609 (P01 Smith HOME)
  • DA059551 (R01 Ott Opioid)
  • AI164570 (BEAT Delaney Collaboratory)
  • DA051915 (DP2 Gianella Avenir)
  • AI164559 (HOPE Delaney Collaboratory)
  • DK131497 (R01 Blasi Renal)
  • H24BD7868 (LaMere CHRP)
  • NS137852 (R01 LaMere Brain Epigenetics)
  • H24BD7837 (Mattia CHRP)
  • U24MH100928 (California NeuroAIDS Tissue Network)
  • MH136852 (R01 Jiang Latency)
  • AI186609 (R01 Jiang Histone)
  • DA055491 (R01 Chaillon Myeloid Cells)
  • MH062512 (Moore HNRC P30)
  • CA023100 (Lippman Cancer)
  • AI181705 (R56 Connick/Gianella)

  • AI147821 (R01 Gianella CMV Replication)
  • AI155680 (R01 Schacklett CMV)

  • AI068636 (ACTG UM1)
  • AI106701 (ACTG Lab Center)

  • AI181655 (R01 Gianella Menopause)
  • AI189309 (R01 Gianella Estrogen Exposure)

  • AMED under Grant Number JP243fa627003 (Smith Japan Grant)
  • AI170254 Sub PH000875A (R01 Rui HIV Rebound modeling)

Core Leadership

Sara Gianella, MD
Sara Gianella, MD
Advanced Technology Core
Director
Antoine Chaillon, MD, PhD
Antoine Chaillon, MD, PhD
Advanced Technology Core
Associate Director
Nadejda Beliakova-Bethell, PhD
Nadejda Beliakova-Bethell, PhD
Advanced Technology Core
Associate Director
Bryan Briney, PhD
Bryan Briney, PhD
Advanced Technology Core
Associate Director
Michael Corley, PhD
Michael Corley, PhD
Advanced Technology Core
Leadership trainee

Questions? Please email cfar@ucsd.edu

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La Jolla, CA 92093 · (858) 534-2230
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