Clinical Investigation Core
About
Submit a Service RequestThe Clinical Investigation (CI) Core provides services and expertise to support clinical, translational, epidemiologic, and implementation science research as well as access to longitudinal clinical databases linked to collected biological specimens. The CI Core’s mission is to accelerate innovative, high-quality, person-centered clinical research to prevent new HIV infections, advance the quality of life and well-being of persons with HIV, reduce barriers to care, and promote interventions to end the HIV epidemic. The Cl Core is jointly housed within the UC San Diego Antiviral Research Center (AVRC) and the HIV Medicine Owen Clinic.
The AVRC is a founding member of the Advancing Clinical Therapeutics Globally (ACTG) network and its mission is to support the development and performance of high-quality research that enhances the quality and duration of life for people with and affected by HIV, including HIV associated co-morbidities, and other infectious diseases of global significance. The AVRC has multiple examination rooms, laboratory and pharmacy facilities, a data center, conference room, library, and freezers for temporary storage of specimens.
The Owen Clinic is one of the oldest HIV clinics in the United States and the largest in San Diego and provides comprehensive HIV treatment and prevention services. Together they provide access to clinical, laboratory, pharmacy, and administrative data dating to 1990, along with a biorepository containing viably stored biospecimens from more than 6,000 participants. Additional partnerships with the CFAR Network of Integrated Clinical Systems (CNICS), North American AIDS Cohort Collaboration on Research and Design (NA-ACCORD), and the Veterans Aging Cohort Study (VACS) enable access to national de-identified data.
Services
The CI Core provides a wide range of services that span clinical research including:
- Access to rich clinical data and biospecimen resources
- Clinic-based study recruitment
- Biologic sample collection, processing, storage for clinical trials
- Study advertisement
- Data Safety and Monitoring Board services
- Institutional Review Board assistance
- Research mentorship
Requesting Services
Access to CNICS data or biospecimens follows an established review process coordinated through the CI Core and CNICS governance. The CI Core provides hands-on support with:
- Feasibility discussions
- Determining appropriate datasets or specimen types
- Navigating submission and approval processes
- Connecting investigators with methodologic or analytic expertise
The CI Core strongly recommends early engagement for clinical, behavioral, and implementation science proposals to determine feasibility, clinic fit, study overlap, and to provide recommendations for effective recruitment strategies.
Our goal is to make these resources accessible and to actively support investigator engagement, from project conception through implementation.
Clinical Data, Specimen Repository, and Investigator Access
The University of California San Diego CFAR participates in the CFAR Network of Integrated Clinical Systems (CNICS), a multi-site clinical cohort that integrates:
- Longitudinal clinical data derived from routine HIV care
- Demographic, treatment, and outcomes data
- Linked biospecimens collected using standardized protocols
- Information about available datasets, specimen types, and participating sites is maintained centrally through CNICS.
Comprehensive and up-to-date details are available via the CNICS website:
This site provides investigators with:
- Detailed descriptions of available specimen types (e.g., plasma, serum, PBMCs)
- Information on populations represented (e.g., age, sex, race/ethnicity, transmission risk, comorbidities)
- Data elements and collection time points
- Governance and access procedures
How Investigators Determine Sample Availability
Investigators—including early stage and those new to SD CFAR—do not need prior engagement to assess feasibility. Sample and data availability can be determined by:
- Reviewing CNICS documentation (linked above), which outlines specimen inventories and cohort characteristics.
- Consulting searchable resources provided through CNICS (e.g., structured data dictionaries and feasibility tools).
- Submit a service request and engage directly with the CI Core to discuss specific populations or scientific questions.
We recognize that navigating large repositories can feel like a barrier, particularly for emerging investigators. To reduce this, our CI Core team can help investigators identify whether samples relevant to a specific population or research question are available and guide next steps.
Cite CNICS
Support CNICS by citing them in your publications, abstracts and grants.
FAQs
What kinds of clinical data are included in the Owen Clinic database?
The Owen Clinic database includes diagnoses, medications, laboratory tests, and quality-of-life assessments documented on patients under care at the Owen Clinic since 1995.
Do I need IRB approval to obtain data from the Owen Clinic database?
In general, an IRB-approved research protocol is required. We can, however, provide summary data that have no patient identifiers to assist investigators in making sample size and power calculations for grant submissions.
Who has to approve requests for data from the Owen Clinic database?
The co-directors of the Clinical Investigation Core review data requests and assign them a priority based on scientific merit, number of hours required to construct the requested dataset, and number of competing requests for Core services.
Are there additional requirements for investigators receiving Core services?
The Core is required to document how and to what extent our services are used, and how our services are leveraged to support successful grant applications and publications. Therefore, if you would like to use core services, please use our Service Request form. In addition, any conference presentations or publications that resulted in whole or in part from contributions of the CFAR Clinical Investigation and Biostatistics Core should acknowledge CFAR support as follows: "This work was performed with the support of the Clinical Investigation and Biostatistics Core of the UC San Diego Center for AIDS Research (AI036214)." If any grants were awarded based in part on services provided by the Core, we request that you contact us so we can collect information about the award.
What statistical services are available from the Core?
Core services can be provided to help plan a clinical project, provide sample size calculations, write brief analytic plans for grants and to perform concisely defined analyses. Full statistical support for major clinical research projects is beyond the scope of the Core; it is more the function of the Core to help investigators apply for grants that would then contain sufficient funding for statistical services. All requests are prioritized based on scientific merit and number of competing requests.
Can the Core help with a Safety Monitoring Plan?
The Core offers periodic interim safety reviews for single-site investigator-initiated clinical research projects. We can also help investigators design monitoring plans and assist in assembling a Data and Safety Monitoring Board. However, full DSMB services are beyond the scope of the Core.
How to acknowledge the Clinical Investigation Core in your publications?
If work performed for you at the CFAR Clinical Investigation Core results in publication, please acknowledge us with the following statement so that we may continue to bring you excellent service: "This work was performed with the support of the Clinical Investigation Core of the UC San Diego Center for AIDS Research (AI036214)."
Where are we located?
Clinical Investigation Core faculty and staff are closely associated with two UC San Diego HIV treatment facilities. Office hours are 8:00 a.m. to 4:30 p.m., Monday through Friday. - AntiViral Research Center (AVRC): Behind the UC San Diego Medical Center in Hillcrest. 220 Dickinson Street, Suite A, San Diego, CA 92103-8208. Phone: 619-543-8080. Fax: 619-543-5066. - Owen Clinic: Third floor of the Ambulatory Care Center (ACC). 4168 Front Street, Third Floor, San Diego, CA 92103. Phone: (619) 543-3995. Fax: (619) 543-7841.
Where can I find tools and templates for clinical research?
Facilitating Compassionate Communication – The Center for Compassionate Communication at the T. Denny Sanford Institute for Empathy and Compassion at UC San Diego Health
This is an abbreviated guide as a reference for the exercises and materials the expert facilitators at Center for Compassionate Communication use when teaching live and/or Zoom sessions. By Val Lantz-Gefroh MFA & Evonne Kaplan-Liss MD-MPH
WE RISE Study Training: Trauma-Informed Research Practices, April 2024
Slide deck covering trauma-informed research practices adapted for the WE RISE Study (D22CN42U). Authored by Jamila Stockman, PhD, MPH, Katherine Anderson, MPH (PhD C.), and Maile Karris, MD. Topics include:
- What is Trauma-Informed Care?
- Original Guidelines for Implementing Trauma-Informed Care
- Application of Trauma-Informed Care in Research Settings
- Examples of a Trauma-Informed Perspective
- Vicarious Trauma & Compassion Fatigue
Practical Guide for Implementing a Trauma-Informed Approach – Substance Abuse and Mental Health Services Administration (SAMHSA), June 2023
This practical guide updates and expands the discussion presented in SAMHSA’s Concept of Trauma and Guidance for a Trauma-Informed Approach Resource from 2014. The primary goal of this guide is to provide implementation strategies across multiple domains based on the original publication.
Concept of Trauma and Guidance for a Trauma-Informed Approach – Substance Abuse and Mental Health Services Administration (SAMHSA), July 2014
This manual introduces a concept of trauma and offers a framework for becoming a trauma-informed organization, system, or service sector. The manual provides a definition of trauma and a trauma-informed approach, and offers 6 key principles and 10 implementation domains.

